In Silico Clermont Phylotyper

Easily find the Clermont 2013 phylotypes of your E. coli strains. Simply upload your contigs as a FASTA file, and get results in seconds.

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Citing

    
If you use the result from ExClermont, please cite our preprint on bioRxiv 

  

  

    
Troubleshooting

    
Try refreshing this page if you run into any issues. You can see the source code on GitHub .

    
Does some result look strange? Please raise an issue on GitHub, attaching your genome of interest.. 

    
Want to run a big batch of genomes?  Install our commandline tool via pip!